Difference between revisions of "HPC:Software"

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For information on how to use software currently installed on the cluster, please read [[HPC:Environment_Modules| <strong>Environment Modules</strong>]]
 
For information on how to use software currently installed on the cluster, please read [[HPC:Environment_Modules| <strong>Environment Modules</strong>]]
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* [[HPC:bamtools| bamtools]]
 
* [[HPC:bamtools| bamtools]]
 
* [[HPC:bcl2fastq| bcl2fastq]]
 
* [[HPC:bcl2fastq| bcl2fastq]]
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* [[HPC:bclconvert| BCL Convert]]
 
* [[HPC:BLAST| BLAST+]]
 
* [[HPC:BLAST| BLAST+]]
 
* [[HPC:BLAT| BLAT]]
 
* [[HPC:BLAT| BLAT]]
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* [[HPC:bwa| bwa]]
 
* [[HPC:bwa| bwa]]
 
* [[HPC:CASAVA| CASAVA]]
 
* [[HPC:CASAVA| CASAVA]]
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* [[HPC:CellRanger| Cell Ranger]]
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* [[HPC:CMake| CMake]]
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* [[HPC:GPU| CUDA]]
 
* [[HPC:cufflinks| Cufflinks]]
 
* [[HPC:cufflinks| Cufflinks]]
 
* [[HPC:Developer_Tool_Set| devtoolset-2 (GCC v4.8.0)]]
 
* [[HPC:Developer_Tool_Set| devtoolset-2 (GCC v4.8.0)]]
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* [[HPC:Homer| Homer]]
 
* [[HPC:Homer| Homer]]
 
* [[HPC:Java| Java]]
 
* [[HPC:Java| Java]]
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* [[HPC:Jupyter| Jupyter]]
 
* [[HPC:kClust| kClust]]
 
* [[HPC:kClust| kClust]]
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* [[HPC:lftp|lftp]]
 
* [[HPC:MPI| mpich2]]
 
* [[HPC:MPI| mpich2]]
 
* [[HPC:MPLUS| MPLUS]]
 
* [[HPC:MPLUS| MPLUS]]
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* [[HPC:Sailfish| Sailfish]]
 
* [[HPC:Sailfish| Sailfish]]
 
* [[HPC:SCons| SCons]]
 
* [[HPC:SCons| SCons]]
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* [[HPC:Singularity| Singularity]]
 
* [[HPC:SRAToolkit| SRA Toolkit]]
 
* [[HPC:SRAToolkit| SRA Toolkit]]
 
* [[HPC:STAR| STAR]]
 
* [[HPC:STAR| STAR]]

Latest revision as of 19:00, 24 August 2021


For information on how to use software currently installed on the cluster, please read Environment Modules

Software currently installed on the PMACS cluster

Manually installing software on the PMACS cluster

If the software (or version of an already installed program) you want isn't available on the PMACS cluster, you have a couple of options:

Note: Due to the high volume of requests we receive, it can take some time for us to handle software install requests. If you have an urgent need for the program, you can try to install the program yourself by following the instructions here

Other Pages