Difference between revisions of "HPC:Software"
From HPC wiki
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If the software (or version of an already installed program) you want isn't available on the PMACS cluster, you have a couple of options: | If the software (or version of an already installed program) you want isn't available on the PMACS cluster, you have a couple of options: | ||
| − | * [[HPC:Manual_Software_Install| Manually install the program]] | + | * [[HPC:Manual_Software_Install| <strong>Manually install the program</strong>]] |
* Send [mailto:pmacshpc@med.upenn.edu us] a note and we'll look into installing this program for you. | * Send [mailto:pmacshpc@med.upenn.edu us] a note and we'll look into installing this program for you. | ||
'''Note:''' Due to the high volume of requests we receive, it can take some time for us to handle software install requests. If you have an urgent need for the program, you can try to install the program yourself by following the instructions [[HPC:Manual_Software_Install| here]] | '''Note:''' Due to the high volume of requests we receive, it can take some time for us to handle software install requests. If you have an urgent need for the program, you can try to install the program yourself by following the instructions [[HPC:Manual_Software_Install| here]] | ||
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=== Other Pages === | === Other Pages === | ||
---- | ---- | ||
Revision as of 14:04, 13 August 2019
Software currently installed on the PMACS cluster
- AllPaths-LG
- bamtools
- bcl2fastq
- BLAST+
- BLAT
- Boost
- bowtie
- bwa
- CASAVA
- Cufflinks
- devtoolset-2 (GCC v4.8.0)
- Environment Modules
- eQtlBma
- FastQC
- FASTX-Toolkit
- GCC v4.8.0
- GCC
- Homer
- Java
- kClust
- mpich2
- MPLUS
- NGSUtils
- NAMD-2.9
- openmpi
- Perl
- Picard Tools
- Python
- R
- Ruby
- RUM
- samtools
- Sailfish
- SCons
- SRA Toolkit
- STAR
- TopHat
- Trimmomatic
- zlib
Manually installing software on the PMACS cluster
If the software (or version of an already installed program) you want isn't available on the PMACS cluster, you have a couple of options:
- Manually install the program
- Send us a note and we'll look into installing this program for you.
Note: Due to the high volume of requests we receive, it can take some time for us to handle software install requests. If you have an urgent need for the program, you can try to install the program yourself by following the instructions here
