Difference between revisions of "HPC:FastQC"
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(Created page with "=== FastQC === FastQC is a Java based quality control tool for high throughput sequence data. FastQC v0.11.2 is installed on all the HPC nodes. ==== Usage ==== FastQC can be...") |
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'''Note:''' To launch this application's graphical interface, an X11 based interactive session must first be initiated. See information on how to launch an X11 based interactive session [[HPC:User_Guide#Interactive_Job_submission_with_X11|here]]. | '''Note:''' To launch this application's graphical interface, an X11 based interactive session must first be initiated. See information on how to launch an X11 based interactive session [[HPC:User_Guide#Interactive_Job_submission_with_X11|here]]. | ||
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=== Other Pages === | === Other Pages === | ||
| + | ---- | ||
| + | <div class="mw-collapsible mw-collapsed"> | ||
| + | *[[HPC:FAQ|HPC FAQ ]] | ||
| + | *[[HPC:Login|Connecting to the PMACS cluster]] | ||
| + | *[[HPC:User_Guide|User Guide]] | ||
*[[HPC:Software|Available Software]] | *[[HPC:Software|Available Software]] | ||
| − | *[[HPC: | + | *[[HPC:Archive System|PMACS Archive System]] |
| − | + | </div> | |
| − | |||
Latest revision as of 15:33, 13 August 2019
FastQC
FastQC is a Java based quality control tool for high throughput sequence data. FastQC v0.11.2 is installed on all the HPC nodes.
Usage
FastQC can be loaded as a module:
[asrini@node061 ~]$ module show FastQC-0.11.2 ------------------------------------------------------------------- /usr/share/Modules/modulefiles/FastQC-0.11.2: module-whatis FastQC is Java software with graphic interface. It is a very convenient tool to overview sequence quality. prepend-path PATH /opt/software/FastQC/0.11.2 ------------------------------------------------------------------- [asrini@node061 ~]$ module load FastQC-0.11.2 [asrini@node061 ~]$ which fastqc /opt/software/FastQC/0.11.2/fastqc [asrini@node061 ~]$ fastqc --version FastQC v0.11.2
Note: To launch this application's graphical interface, an X11 based interactive session must first be initiated. See information on how to launch an X11 based interactive session here.
