Difference between revisions of "HPC:Software"
From HPC wiki
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=== Software currently installed on the PMACS cluster === | === Software currently installed on the PMACS cluster === | ||
| − | + | * [[HPC:AllPaths-LG| AllPaths-LG]] | |
| + | * [[HPC:bamtools| bamtools]] | ||
* [[HPC:bcl2fastq| bcl2fastq]] | * [[HPC:bcl2fastq| bcl2fastq]] | ||
* [[HPC:BLAST| BLAST+]] | * [[HPC:BLAST| BLAST+]] | ||
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* [[HPC:CASAVA| CASAVA]] | * [[HPC:CASAVA| CASAVA]] | ||
* [[HPC:cufflinks| Cufflinks]] | * [[HPC:cufflinks| Cufflinks]] | ||
| − | * [[HPC:Developer_Tool_Set|devtoolset-2]] | + | * [[HPC:Developer_Tool_Set| devtoolset-2]] |
| − | * [[HPC:Environment_Modules|Environment Modules]] | + | * [[HPC:Environment_Modules| Environment Modules]] |
* [[HPC:eQtlBma|eQtlBma]] | * [[HPC:eQtlBma|eQtlBma]] | ||
| − | * [[HPC:Homer|Homer]] | + | * [[HPC:FastQC| FastQC]] |
| − | * [[HPC:Java|Java]] | + | * [[HPC:FASTX-Toolkit| FASTX-Toolkit]] |
| − | * [[HPC:MPI|mpich2]] | + | * [[HPC:Homer| Homer]] |
| − | * [[HPC:NAMD|NAMD-2.9]] | + | * [[HPC:Java| Java]] |
| − | * [[HPC:MPI|openmpi]] | + | * [[HPC:kClust| kClust]] |
| + | * [[HPC:MPI| mpich2]] | ||
| + | * [[HPC:NGSUtils| NGSUtils]] | ||
| + | * [[HPC:NAMD| NAMD-2.9]] | ||
| + | * [[HPC:MPI| openmpi]] | ||
* [[HPC:Perl|Perl]] | * [[HPC:Perl|Perl]] | ||
| − | * | + | * [[HPC:Picard| Picard Tools]] |
* [[HPC:Python|Python]] | * [[HPC:Python|Python]] | ||
| − | * R | + | * [[HPC:GNUR| GNU R]] |
| − | * | + | * [[HPC:Ruby| Ruby]] |
| − | * | + | * [[HPC:Rum| RUM]] |
| − | |||
* [[HPC:samtools| samtools]] | * [[HPC:samtools| samtools]] | ||
* [[HPC:SCons| SCons]] | * [[HPC:SCons| SCons]] | ||
| − | * STAR | + | * [[HPC:SRAToolkit| SRA Toolkit]] |
| − | * [[HPC:tophat|TopHat]] | + | * [[HPC:STAR| STAR]] |
| + | * [[HPC:tophat| TopHat]] | ||
| + | * [[HPC:Trimmomatic| Trimmomatic]] | ||
