Difference between revisions of "HPC:Software"
From HPC wiki
| Line 16: | Line 16: | ||
* [[HPC:CASAVA| CASAVA]] | * [[HPC:CASAVA| CASAVA]] | ||
* [[HPC:cufflinks| Cufflinks]] | * [[HPC:cufflinks| Cufflinks]] | ||
| − | * [[HPC:Developer_Tool_Set| devtoolset-2 (GCC)]] | + | * [[HPC:Developer_Tool_Set| devtoolset-2 (GCC v4.8.0)]] |
* [[HPC:Environment_Modules| Environment Modules]] | * [[HPC:Environment_Modules| Environment Modules]] | ||
* [[HPC:eQtlBma|eQtlBma]] | * [[HPC:eQtlBma|eQtlBma]] | ||
* [[HPC:FastQC| FastQC]] | * [[HPC:FastQC| FastQC]] | ||
* [[HPC:FASTX-Toolkit| FASTX-Toolkit]] | * [[HPC:FASTX-Toolkit| FASTX-Toolkit]] | ||
| + | * [[HPC:Developer_Tool_Set| GCC v4.8.0]] | ||
* [[HPC:Homer| Homer]] | * [[HPC:Homer| Homer]] | ||
* [[HPC:Java| Java]] | * [[HPC:Java| Java]] | ||
Revision as of 17:38, 26 February 2016
Other Pages
Software currently installed on the PMACS cluster
- AllPaths-LG
- bamtools
- bcl2fastq
- BLAST+
- BLAT
- Boost
- bowtie
- bwa
- CASAVA
- Cufflinks
- devtoolset-2 (GCC v4.8.0)
- Environment Modules
- eQtlBma
- FastQC
- FASTX-Toolkit
- GCC v4.8.0
- Homer
- Java
- kClust
- mpich2
- NGSUtils
- NAMD-2.9
- openmpi
- Perl
- Picard Tools
- Python
- R
- Ruby
- RUM
- samtools
- Sailfish
- SCons
- SRA Toolkit
- STAR
- TopHat
- Trimmomatic
- zlib
Manually installing software on the PMACS cluster
If the software (or version of an already installed program) you want isn't available on the PMACS cluster, you have a couple of options:
- Manually install the program
- Send us a note and we'll look into installing this program for you.
Note: Due to the high volume of requests we receive, it can take some time for us to handle software install requests. If you have an urgent need for the program, you can try to install the program yourself by following the instructions here
