Difference between revisions of "HPC:Software"

From HPC wiki
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=== Software currently installed on the PMACS cluster ===  
 
=== Software currently installed on the PMACS cluster ===  
 
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* [[HPC:AllPaths-LG| AllPaths-LG]]
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* [[HPC:bamtools| bamtools]]
 
* [[HPC:bcl2fastq| bcl2fastq]]
 
* [[HPC:bcl2fastq| bcl2fastq]]
 
* [[HPC:BLAST| BLAST+]]
 
* [[HPC:BLAST| BLAST+]]
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* [[HPC:CASAVA| CASAVA]]
 
* [[HPC:CASAVA| CASAVA]]
 
* [[HPC:cufflinks| Cufflinks]]
 
* [[HPC:cufflinks| Cufflinks]]
* [[HPC:Developer_Tool_Set|devtoolset-2]]
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* [[HPC:Developer_Tool_Set| devtoolset-2]]
* [[HPC:Environment_Modules|Environment Modules]]
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* [[HPC:Environment_Modules| Environment Modules]]
 
* [[HPC:eQtlBma|eQtlBma]]
 
* [[HPC:eQtlBma|eQtlBma]]
* [[HPC:Homer|Homer]]
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* [[HPC:FastQC| FastQC]]
* [[HPC:Java|Java]]
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* [[HPC:FASTX-Toolkit| FASTX-Toolkit]]
* [[HPC:MPI|mpich2]]
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* [[HPC:Homer| Homer]]
* [[HPC:NAMD|NAMD-2.9]]
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* [[HPC:Java| Java]]
* [[HPC:MPI|openmpi]]
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* [[HPC:kClust| kClust]]
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* [[HPC:MPI| mpich2]]
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* [[HPC:NGSUtils| NGSUtils]]  
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* [[HPC:NAMD| NAMD-2.9]]
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* [[HPC:MPI| openmpi]]
 
* [[HPC:Perl|Perl]]
 
* [[HPC:Perl|Perl]]
* picard-1.96
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* [[HPC:Picard| Picard Tools]]
 
* [[HPC:Python|Python]]
 
* [[HPC:Python|Python]]
* R
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* [[HPC:GNUR| GNU R]]
* ruby-1.8.7-p374
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* [[HPC:Ruby| Ruby]]
* ruby-1.9.3-p448
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* [[HPC:Rum| RUM]]
* rum-2.0.5_05
 
 
* [[HPC:samtools| samtools]]
 
* [[HPC:samtools| samtools]]
 
* [[HPC:SCons| SCons]]
 
* [[HPC:SCons| SCons]]
* STAR-2.3.0e
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* [[HPC:SRAToolkit| SRA Toolkit]]
* [[HPC:tophat|TopHat]]
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* [[HPC:STAR| STAR]]
 +
* [[HPC:tophat| TopHat]]
 +
* [[HPC:Trimmomatic| Trimmomatic]]

Revision as of 20:52, 20 January 2015