Difference between revisions of "HPC:Main Page"
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=== Guidelines === | === Guidelines === | ||
Don't run compute-intensive tasks on the cluster head node (consign). Use an interactive node (bsub -Is bash) instead. Please read the man page for 'bsub' and the documentation linked below. | Don't run compute-intensive tasks on the cluster head node (consign). Use an interactive node (bsub -Is bash) instead. Please read the man page for 'bsub' and the documentation linked below. | ||
| + | |||
| + | === Common Commands (IBM Platform LSF) === | ||
| + | Please also refer the man pages for bsub, bjobs, bkill, bhist, bqueues and bhosts. | ||
| + | * <strong>bsub <job script></strong> : submit a job description file for execution | ||
| + | * <strong>bsub -Is bash</strong> : request a node for interactive use: see [[PMHPC:Using qlogin]] | ||
| + | * <strong>bjbos <jobid></strong> : show the status of a job | ||
| + | * <strong>bjbos -l <jobid></strong> : show more details about the job | ||
| + | * <strong>bkill <jobid></strong> : cancel a job | ||
| + | * <strong>bjobs -u <user></strong> : display jobs queued or running for a single user | ||
| + | * <strong>bjobs -u all</strong> : to see all jobs | ||
Revision as of 22:25, 18 November 2013
High Performance Computing at PennMedicine is supported by the Enterprise Research Applications (ERA) group within Penn Medicine Academic Computing Services (PMACS). Please send requests and report problems to Jason/Rikki/Anand
Accounts
For Account requests please contact Jason Hughes/Rikki Godshall or Anand Srinivasan
Other Pages
Connecting
Currently, secure shell (SSH) is the only supported method of connecting to the cluster. The login machine name is consign.pmacs.upenn.edu You should probably add "ServerKeepAliveInterval 60" to your SSH client's configuration.
After your account is created, you can connect using your PMACS credentials.
Guidelines
Don't run compute-intensive tasks on the cluster head node (consign). Use an interactive node (bsub -Is bash) instead. Please read the man page for 'bsub' and the documentation linked below.
Common Commands (IBM Platform LSF)
Please also refer the man pages for bsub, bjobs, bkill, bhist, bqueues and bhosts.
- bsub <job script> : submit a job description file for execution
- bsub -Is bash : request a node for interactive use: see PMHPC:Using qlogin
- bjbos <jobid> : show the status of a job
- bjbos -l <jobid> : show more details about the job
- bkill <jobid> : cancel a job
- bjobs -u <user> : display jobs queued or running for a single user
- bjobs -u all : to see all jobs
