HPC:Homer

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HOMER

HOMER v4.6, 3-29-2014 is installed across all HPC nodes.

Usage

HOMER can be loaded as a module:

[asrini@node061 ~]$ module load homer-v4.6

[asrini@node061 ~]$ homer
homer : Empirical Motif Optimizer
usage: ./homer [data] [parameters] -a [action]
This program is meant to be called from other programs (i.e. findMotifsGenome.pl), and not used directly
Data options:
	-dna|-prot : Sequence type (-dna)
	-s <file> : Sequence File
	-g <file> : Group/Stat File
	-mer <file> : Mer File
	-m <file> : PSSM Motif File
	-o <file> : output file prefix
	-seed <file> : seed file
	-offset <#> : offset of sequence from TSS (-2000)

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