HPC:FastQC
From HPC wiki
FastQC
FastQC is a Java based quality control tool for high throughput sequence data. FastQC v0.11.2 is installed on all the HPC nodes.
Usage
FastQC can be loaded as a module:
[asrini@node061 ~]$ module show FastQC-0.11.2 ------------------------------------------------------------------- /usr/share/Modules/modulefiles/FastQC-0.11.2: module-whatis FastQC is Java software with graphic interface. It is a very convenient tool to overview sequence quality. prepend-path PATH /opt/software/FastQC/0.11.2 ------------------------------------------------------------------- [asrini@node061 ~]$ module load FastQC-0.11.2 [asrini@node061 ~]$ which fastqc /opt/software/FastQC/0.11.2/fastqc [asrini@node061 ~]$ fastqc --version FastQC v0.11.2
Note: To launch this application's graphical interface, an X11 based interactive session must first be initiated. See information on how to launch an X11 based interactive session here.
