Difference between revisions of "HPC:AllPaths-LG"
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=== Other Pages === | === Other Pages === | ||
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| + | *[[HPC:FAQ|HPC FAQ ]] | ||
| + | *[[HPC:Login|Connecting to the PMACS cluster]] | ||
| + | *[[HPC:User_Guide|User Guide]] | ||
*[[HPC:Software|Available Software]] | *[[HPC:Software|Available Software]] | ||
| − | *[[HPC: | + | *[[HPC:Archive System|PMACS Archive System]] |
| − | + | </div> | |
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Latest revision as of 15:16, 13 August 2019
AllPaths-LG
AllPaths-LG is a short read genome assembler from the Computational Research and Development group at the Broad Institute. AllPaths-LG v49967 is installed across all HPC nodes.
Usage
AllPaths-LG can be loaded as a module
[asrini@node062 ~]$ module show AllPaths-LG-v49967 ------------------------------------------------------------------- /usr/share/Modules/modulefiles/AllPaths-LG-v49967: module-whatis AllPaths-LG v49967 prepend-path PATH /opt/software/AllPaths-LG/v49967/bin prepend-path MANPATH /opt/software/AllPaths-LG/v49967/share/doc ------------------------------------------------------------------- [asrini@node062 ~]$ module load AllPaths-LG-v49967 [asrini@node062 ~]$ which AllPathsReport /opt/software/AllPaths-LG/v49967/bin/AllPathsReport [asrini@node062 ~]$ AllPathsReport Performing re-exec to adjust stack size. Usage: AllPathsReport arg1=value1 arg2=value2 ... Required arguments: PRE (String) DATA (String) RUN (String) Optional arguments: SUBDIR (String) default: test ASSEMBLY (String) default: final MIN_CONTIG (int) default: 1000 To see additional special arguments, type: AllPathsReport --help special
