HPC:CASAVA

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CASAVA

CASAVA v1.8.2 is installed across all HPC nodes.

Usage

CASAVA can be loaded as a module: 

[asrini@node061 ~]$ module load CASAVA-v1.8.2

[asrini@node061 ~]$ which CASAVA
/opt/software/CASAVA/v1.8.2/bin/CASAVA

[asrini@node061 ~]$ CASAVA -v
INFO: @CASAVA_VERSION_FULL@

[asrini@node061 ~]$ CASAVA -h
INFO: Usage: CASAVA [Options]
	-a, --applicationType=TYPE - type of analysis [AlignContig, CheckOrder, IndelFinder, SmallAssembler, ExportExample, Export2Fastq]

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