HPC:BaseSpaceCLI

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Revision as of 17:43, 23 April 2018 by Asrini (talk | contribs)

BaseSpaceCLI

This page has information on how to set up and download sequencing data from Illumina's BaseSpace Sequence Hub.

BaseSpace Sequence Hub CLI is available here

To setup the the CLI tool follow these steps

Step 0: Launch interactive session

 bsub -Is bash

Step 1: Download the CLI tools

  wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O $HOME/bin/bs

  wget https://bintray.com/basespace/BaseSpace-Copy-BIN/download_file?file_path=0.5.4.331%2Flinux%2Fbscp -O $HOME/bin/bs-cp

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