HPC:Queues
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PMACS HPC Cluster Queues
Beginning June 1st, 2015, only the following queues will be available for use:
1. normal (default) : Intended for non-interactive jobs, the default reservations are 1 vCPU core and 6GB of RAM. Per user job limit: 1000
2. interactive : Intended for interactive jobs, the default reservations are 1 vCPU core and 6GB of RAM. Per user job limit: 10
3. denovo : Intended for big-memory jobs. The default reservations are 1 CPU core and 24 GB of RAM. Per user job limit: 32
$ bqueues QUEUE_NAME PRIO STATUS MAX JL/U JL/P JL/H NJOBS PEND RUN SUSP normal 30 Open:Active - 1000 - - 0 0 0 0 interactive 30 Open:Active - - - - 1 0 1 0 denovo 30 Open:Active - 32 - - 0 0 0 0
Example usage of LSF commands
Documented here are a few of the commonly used LSF commands. They are NOT intended for copy-paste purposes, but are intended to provide some guidelines on how these can be used.
Batch (non-interactive) Job submission
To run a job in batch mode:
$ bsub <script_name>
Example:
$ bsub sh sleep.sh Job <9990021> is submitted to default queue <normal>.
To run a job in batch mode that needs more RAM:
$ bsub -M <memory_required> <script_name>
Example:
$ bsub -M 30720 sh sleep.sh Job <9990022> is submitted to default queue <normal>.
