HPC:Software

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Software currently installed on the PMACS cluster

bcl2fastq
BLAST+
BLAT
bowtie
bwa
CASAVA
Cufflinks
devtoolset-2
Environment Modules
eQtlBma
Homer
Java
mpich2
NAMD-2.9
openmpi
Perl
picard-1.96
Python
R
ruby-1.8.7-p374
ruby-1.9.3-p448
rum-2.0.5_05
samtools
SCons
STAR-2.3.0e
TopHat

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