Difference between revisions of "HPC:Sailfish"
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(Created page with "=== Sailfish === Sailfish is a Rapid Alignment-free Isoform Quantification from RNA-Seq Reads Sailfish v0.6.3 is installed on all the PMACS cluster nodes and is made availabl...") |
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=== Sailfish === | === Sailfish === | ||
| − | Sailfish is a Rapid Alignment-free Isoform Quantification from RNA-Seq Reads | + | Sailfish is a program intended for Rapid Alignment-free Isoform Quantification from RNA-Seq Reads. Sailfish v0.6.3 is installed on all the PMACS cluster nodes and is made available as an environment module: |
| − | |||
| − | Sailfish v0.6.3 is installed on all the PMACS cluster nodes and is made available as an environment module: | ||
<pre> | <pre> | ||
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</pre> | </pre> | ||
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=== Other Pages === | === Other Pages === | ||
| + | ---- | ||
| + | <div class="mw-collapsible mw-collapsed"> | ||
| + | *[[HPC:FAQ|HPC FAQ ]] | ||
| + | *[[HPC:Login|Connecting to the PMACS cluster]] | ||
| + | *[[HPC:User_Guide|User Guide]] | ||
*[[HPC:Software|Available Software]] | *[[HPC:Software|Available Software]] | ||
| − | *[[HPC: | + | *[[HPC:Archive System|PMACS Archive System]] |
| − | + | </div> | |
| − | |||
Latest revision as of 15:47, 13 August 2019
Sailfish
Sailfish is a program intended for Rapid Alignment-free Isoform Quantification from RNA-Seq Reads. Sailfish v0.6.3 is installed on all the PMACS cluster nodes and is made available as an environment module:
[asrini@consign ~]$ bsub -Is bash
[asrini@node061 ~]$ module show sailfish-0.6.3
-------------------------------------------------------------------
/usr/share/Modules/modulefiles/sailfish-0.6.3:
module-whatis Rapid Alignment-free Isoform Quantification from RNA-Seq Reads
prepend-path PATH /opt/software/sailfish/0.6.3/bin
prepend-path LD_LIBRARY_PATH /opt/software/sailfish/0.6.3/lib
-------------------------------------------------------------------
[asrini@node061 ~]$ module load sailfish-0.6.3
[asrini@node061 ~]$ sailfish -h
Allowed Options:
-v [ --version ] print version string
--no-version-check don't check with the server to see if this is the
latest version
-h [ --help ] produce help message
Sailfish v0.6.3
===============
Please invoke sailfish with one of the following commands {index, quant, sf}.
For more inforation on the options for theses particular methods, use the -h
flag along with the method name. For example:
Sailfish index -h
will give you detailed help information about the index command.
