Difference between revisions of "HPC:BaseSpaceCLI"
From HPC wiki
(Created page with "=== BaseSpaceCLI === This page has information on how to set up and download sequencing data from Illumina's BaseSpace Sequence Hub. BaseSpace Sequence Hub CLI is available ...") |
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This page has information on how to set up and download sequencing data from Illumina's BaseSpace Sequence Hub. | This page has information on how to set up and download sequencing data from Illumina's BaseSpace Sequence Hub. | ||
| − | BaseSpace Sequence Hub CLI is available [ https://developer.basespace.illumina.com/docs/content/documentation/cli/cli-overview#BaseSpaceSequenceHubCLI here] | + | BaseSpace Sequence Hub CLI is available [https://developer.basespace.illumina.com/docs/content/documentation/cli/cli-overview#BaseSpaceSequenceHubCLI here] |
| + | '''To setup the the CLI tool follow these steps''' | ||
| + | |||
| + | ==== Step 0: Launch interactive session ==== | ||
| + | bsub -Is bash | ||
| + | |||
| + | ==== Step 1: Download the CLI tools ==== | ||
| + | <pre> | ||
| + | wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O $HOME/bin/bs | ||
| + | </pre> | ||
| + | <pre> | ||
| + | wget https://bintray.com/basespace/BaseSpace-Copy-BIN/download_file?file_path=0.5.4.331%2Flinux%2Fbscp -O $HOME/bin/bs-cp | ||
| + | </pre> | ||
==== Other Pages ==== | ==== Other Pages ==== | ||
Revision as of 17:43, 23 April 2018
Contents
BaseSpaceCLI
This page has information on how to set up and download sequencing data from Illumina's BaseSpace Sequence Hub.
BaseSpace Sequence Hub CLI is available here
To setup the the CLI tool follow these steps
Step 0: Launch interactive session
bsub -Is bash
Step 1: Download the CLI tools
wget "https://api.bintray.com/content/basespace/BaseSpaceCLI-EarlyAccess-BIN/latest/\$latest/amd64-linux/bs?bt_package=latest" -O $HOME/bin/bs
wget https://bintray.com/basespace/BaseSpace-Copy-BIN/download_file?file_path=0.5.4.331%2Flinux%2Fbscp -O $HOME/bin/bs-cp
