Difference between revisions of "HPC:Queues"
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interactive 30 Open:Active - - - - 1 0 1 0 | interactive 30 Open:Active - - - - 1 0 1 0 | ||
denovo 30 Open:Active - 32 - - 0 0 0 0 | denovo 30 Open:Active - 32 - - 0 0 0 0 | ||
| + | </pre> | ||
| + | |||
| + | === Example usage of LSF commands === | ||
| + | |||
| + | Documented here are a few of the commonly used LSF commands. They are '''NOT''' intended for copy-paste purposes, but are intended to provide some guidelines on how these can be used. | ||
| + | |||
| + | |||
| + | ==== Batch (non-interactive) Job submission ==== | ||
| + | To run a job in batch mode: | ||
| + | |||
| + | <pre>$ bsub <script_name> </pre> | ||
| + | Example: | ||
| + | |||
| + | <pre>$ bsub sh sleep.sh | ||
| + | Job <9990021> is submitted to default queue <normal>. | ||
| + | </pre> | ||
| + | |||
| + | To run a job in batch mode that needs more RAM: | ||
| + | |||
| + | <pre>$ bsub -M <memory_required> <script_name> </pre> | ||
| + | |||
| + | Example: | ||
| + | |||
| + | <pre>$ bsub -M 30720 sh sleep.sh | ||
| + | Job <9990022> is submitted to default queue <normal>. | ||
</pre> | </pre> | ||
Revision as of 20:35, 29 May 2015
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PMACS HPC Cluster Queues
Beginning June 1st, 2015, only the following queues will be available for use:
1. normal (default) : Intended for non-interactive jobs, the default reservations are 1 vCPU core and 6GB of RAM. Per user job limit: 1000
2. interactive : Intended for interactive jobs, the default reservations are 1 vCPU core and 6GB of RAM. Per user job limit: 10
3. denovo : Intended for big-memory jobs. The default reservations are 1 CPU core and 24 GB of RAM. Per user job limit: 32
$ bqueues QUEUE_NAME PRIO STATUS MAX JL/U JL/P JL/H NJOBS PEND RUN SUSP normal 30 Open:Active - 1000 - - 0 0 0 0 interactive 30 Open:Active - - - - 1 0 1 0 denovo 30 Open:Active - 32 - - 0 0 0 0
Example usage of LSF commands
Documented here are a few of the commonly used LSF commands. They are NOT intended for copy-paste purposes, but are intended to provide some guidelines on how these can be used.
Batch (non-interactive) Job submission
To run a job in batch mode:
$ bsub <script_name>
Example:
$ bsub sh sleep.sh Job <9990021> is submitted to default queue <normal>.
To run a job in batch mode that needs more RAM:
$ bsub -M <memory_required> <script_name>
Example:
$ bsub -M 30720 sh sleep.sh Job <9990022> is submitted to default queue <normal>.
